BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB027G06LP1|AL428779
(928 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig931 1447 0.0
>3x_Contig931
Length = 3901
Score = 1447 bits (730), Expect = 0.0
Identities = 747/750 (99%), Gaps = 2/750 (0%)
Strand = Plus / Plus
Query: 181 gcatccgaagtacataagttataacctacctctgcaaccgaagg-cgctcgccaacaggt 239
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1 gcatccgaagtacataagttataacctacctctgcaaccgaagggcgctcgccaacaggt 60
Query: 240 gacgaacttctgcagtcctctctcaatggtttcaaggcccacggccacgtgatattctac 299
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 61 gacgaacttctgcagtcctctctcaatggtttcaaggcccacggccacgcgatattctac 120
Query: 300 cagcttcacgagatccgggtaatgtcctgattttttttccttctttttcctccagctttg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cagcttcacgagatccgggtaatgtcctgattttttttccttctttttcctccagctttg 180
Query: 360 ataaggaaaagaaatgtcgggtattattaaccataagattctcaatcaagcaaggctcat 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ataaggaaaagaaatgtcgggtattattaaccataagattctcaatcaagcaaggctcat 240
Query: 420 cacacggagtctgaaagcgaaaacgtcaacgaagatgggttggttctgggctgacaagct 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 cacacggagtctgaaagcgaaaacgtcaacgaagatgggttggttctgggctgacaagct 300
Query: 480 aagcacagcgtcaactaatgctactccaatttctggagatatttctgcgtgccctgtgat 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aagcacagcgtcaactaatgctactccaatttctggagatatttctgcgtgccctgtgat 360
Query: 540 gcacgataaacctaagggaagcgatgtttccgcatgccctgttcttcatgataagaagac 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gcacgataaacctaagggaagcgatgtttccgcatgccctgttcttcatgataagaagac 420
Query: 600 cacagataaacccaccggtac-gaaggtggttgtccagtcttgtctgatcaaggtaatca 658
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 421 cacagataaacccaccggtacggaaggtggttgtccagtcttgtctgatcaaggtaatca 480
Query: 659 tggcttaaatcctttgaacaacattcctatcgccttgactgatgtcaaacagtctggtca 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tggcttaaatcctttgaacaacattcctatcgccttgactgatgtcaaacagtctggtca 540
Query: 719 aaaactcgatctaccaacggagcgtaccgttagttccataccaaagggtaagactgccga 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 aaaactcgatctaccaacggagcgtaccgttagttccataccaaagggtaagactgccga 600
Query: 779 tgatgaattttgggaatatccttctccgcagcagatgtacaatgcaatggtgagaaaggg 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 tgatgaattttgggaatatccttctccgcagcagatgtacaatgcaatggtgagaaaggg 660
Query: 839 taagattgacccatttactggggaggaaattcctgaagatgctgtcgagtctatggtatt 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 taagattgacccatttactggggaggaaattcctgaagatgctgtcgagtctatggtatt 720
Query: 899 tgttcacaactttttgaatgagggatgttg 928
||||||||||||||||||||||||||||||
Sbjct: 721 tgttcacaactttttgaatgagggatgttg 750
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6941
Number of Sequences: 1807
Number of extensions: 6941
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 1
length of query: 928
length of database: 10,358,551
effective HSP length: 16
effective length of query: 912
effective length of database: 10,329,639
effective search space: 9420630768
effective search space used: 9420630768
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)